PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29603.m000535
Common NameLOC8276169, RCOM_0492550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 194aa    MW: 21896 Da    PI: 6.3534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29603.m000535genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163759123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H++ H
  29603.m000535 37 YECSFCKRGFTNAQALGGHMNIH 59
                   99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-52962IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.56E-73364No hitNo description
SMARTSM003550.0093759IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5313764IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGSRIQACSD TSSEENDRQQ VKEDATTITT NTAKRSYECS FCKRGFTNAQ ALGGHMNIHR  60
RDRAKTAKQV MSSSSSSISS KTNEEHTKPN YIGSISSEPM NYYQVLESQK NYPMYFQPSG  120
SSSPRQVPQV YYNYGSDDFL VPRNNKSLSR DEECWGANLS LQLGSNHLQD NGMNMEVAKE  180
DEVDLELRLG HDRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529317.11e-146PREDICTED: transcriptional regulator SUPERMAN
TrEMBLB9STJ81e-146B9STJ8_RICCO; Transcriptional regulator SUPERMAN, putative
STRINGPOPTR_0008s16410.19e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-16C2H2 family protein